Soft Pumpkin Cream Cheese Muffins
It started on an ordinary weekday morning when the sky was heavy with gray clouds, hinting at rain. I had no grand baking plans, just the urge to brighten the day with something warm and homemade. As I reached into the pantry, the can of pumpkin puree practically called my name, reminding me of all the cozy flavors waiting to be stirred together.
I set out the flour, spices, and cream cheese, arranging them on the counter like pieces of a small puzzle. The rhythm of mixing pumpkin with sugar, cinnamon with ginger became its own kind of quiet meditation. Adding the cream cheese swirl felt like a little act of indulgence, turning a humble muffin into something layered and special.
By the time the rain began tapping against the windows, the oven had transformed the kitchen into a sanctuary. The scent of pumpkin spice wrapped itself around every corner of the house, and I realized this wasn’t just a way to pass a cloudy morning. It was a moment of pause, a little gift of sweetness baked right into the day.

Short Description
Soft Pumpkin Cream Cheese Muffins combine warm pumpkin spice, tender crumb, and a creamy swirl of sweetened cream cheese. Perfect for breakfast, snacks, or holiday gatherings.
Key Ingredients
- 1 ¾ cups all-purpose flour (fluffed and spooned, not packed)
- 1 can (15 oz) pure pumpkin puree (not pumpkin pie filling)
- ½ cup granulated sugar
- ½ cup light brown sugar, packed
- ½ cup vegetable oil (or melted, cooled butter)
- 2 large eggs
- 1 tsp vanilla extract
- 1 tsp baking soda
- ½ tsp salt
- 2 tsp pumpkin spice (or homemade blend: 4 tsp cinnamon, 2 tsp ginger, 1 tsp cloves, ½ tsp nutmeg, ½ tsp allspice)
For the cream cheese swirl
- 8 oz cream cheese, softened
- ¼ cup granulated sugar
- 1 egg yolk
- ½ tsp vanilla extract
Tools Needed
- Muffin tin (12-cup standard size)
- Paper liners
- Mixing bowls (large and medium)
- Hand mixer or stand mixer
- Whisk and spatula
- Toothpick for swirling
Cooking Instructions
Step 1: Prepare the dry ingredients
Whisk together flour, pumpkin spice, baking soda, and salt in a medium bowl. Set aside.
Step 2: Mix the wet ingredients
In a large bowl, whisk pumpkin puree, granulated sugar, brown sugar, eggs, vegetable oil, and vanilla extract until smooth.
Step 3: Combine wet and dry
Gradually add the flour mixture to the pumpkin mixture. Stir gently just until combined do not overmix. The batter should be thick but scoopable. Fill each muffin liner about ¾ full.
Step 4: Make the cream cheese swirl
In a separate bowl, beat cream cheese until smooth. Add sugar, egg yolk, and vanilla extract. Beat again until creamy.
Step 5: Swirl the cream cheese
Spoon about 1 tablespoon of the cream cheese mixture on top of each muffin. Use a toothpick to gently swirl it into the batter for a marbled effect, or leave as a creamy center.
Step 6: Bake
Preheat oven to 350°F. Bake muffins for 18–20 minutes, or until a toothpick inserted into the pumpkin part comes out with just a few moist crumbs. The tops should spring back lightly when touched.
Step 7: Cool
Let muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.
Why You’ll Love This Recipe
Soft and tender with a moist crumb
The cream cheese swirl adds tang and richness
Easy enough for beginners, impressive enough for guests
Uses simple pantry staples
Perfect for fall mornings, brunches, or holiday gatherings
Mistakes to Avoid & Solutions
Overmixing the batter
This creates dense muffins.
Solution: Stir only until the flour disappears.
Using pumpkin pie filling instead of puree
Pie filling is pre-sweetened and spiced.
Solution: Always double-check the can label.
Overbaking
Muffins can dry out.
Solution: Test with a toothpick at 18 minutes and remove as soon as it comes out mostly clean.
Not softening cream cheese
Cold cream cheese clumps.
Solution: Let it sit at room temperature for 30 minutes before mixing.
Skipping liners
Muffins may stick to the pan.
Solution: Always use paper liners or grease the tin well.
Serving and Pairing Suggestions
Serve warm with a cup of chai tea, coffee, or hot cocoa.
Pair with fresh fruit for a balanced breakfast.
For brunch, arrange them on a platter with scones and mini quiches.
For dessert, drizzle with caramel sauce and sprinkle with chopped pecans.
Storage and Reheating Tips
Store cooled muffins in an airtight container in the refrigerator for up to 4 days.
To reheat, warm in a 300°F oven for 5–7 minutes.
Avoid microwaving, which can make the cream cheese rubbery.
Freeze muffins (without cream cheese swirl) for up to 2 months. Thaw overnight and add the cream cheese swirl before baking fresh.
FAQs
1. Can I make these muffins gluten-free?
Yes, substitute a 1:1 gluten-free flour blend for the all-purpose flour.
2. Can I reduce the sugar?
You can cut each sugar by ¼ cup, but note that the muffins will be less sweet.
3. Can I use homemade pumpkin puree?
Absolutely, just make sure it is well-drained and not watery.
4. Can I use low-fat cream cheese?
I don’t recommend it—low-fat cream cheese can make the swirl watery and less creamy.
5. How do I make jumbo muffins?
Fill jumbo muffin tins ¾ full and bake for 23–25 minutes at 350°F.
Tips & Tricks
Use room-temperature ingredients for smoother mixing.
For extra flavor, sprinkle the tops with cinnamon sugar before baking.
If the cream cheese mixture feels too soft, chill it for 10 minutes before adding to the muffins.
Add chopped pecans or walnuts to the batter for crunch.
Recipe Variations
Chocolate Chip Pumpkin Cream Cheese Muffins: Stir ½ cup mini chocolate chips into the pumpkin batter before baking.
Maple Cream Cheese Swirl: Replace granulated sugar in the cream cheese mixture with 2 tbsp maple syrup for a warm, earthy sweetness.
Nutty Crunch Muffins: Top each muffin with a sprinkle of chopped pecans or streusel before baking for extra texture.
Spiced Latte Muffins: Add 1 tsp instant espresso powder to the pumpkin batter for a subtle coffee flavor.
Coconut Pumpkin Muffins: Replace vegetable oil with melted coconut oil and add ¼ cup shredded coconut to the batter for a tropical twist.
Final Thoughts
These Soft Pumpkin Cream Cheese Muffins bring together tender pumpkin spice and a silky filling, making them both cozy and elegant. They’re simple to prepare yet impressive on the table, perfect for adding a seasonal touch to breakfast or turning a coffee break into something special.
The process felt easy and rewarding—just a few bowls, a whisk, and some pantry staples created muffins that looked like they came from a bakery. They’re versatile enough to share with neighbors, tuck into a lunchbox, or enjoy warm with tea after a long day. Practical, flavorful, and timeless, these muffins are worth baking on repeat throughout the fall season.
Soft Pumpkin Cream Cheese Muffins
Course: DessertsDifficulty: Easy12
servings15
minutes20
minutesSoft Pumpkin Cream Cheese Muffins combine warm pumpkin spice, tender crumb, and a creamy swirl of sweetened cream cheese. Perfect for breakfast, snacks, or holiday gatherings.
Ingredients
1 ¾ cups all-purpose flour (fluffed and spooned, not packed)
1 can (15 oz) pure pumpkin puree (not pumpkin pie filling)
½ cup granulated sugar
½ cup light brown sugar, packed
½ cup vegetable oil (or melted, cooled butter)
2 large eggs
1 tsp vanilla extract
1 tsp baking soda
½ tsp salt
2 tsp pumpkin spice (or homemade blend: 4 tsp cinnamon, 2 tsp ginger, 1 tsp cloves, ½ tsp nutmeg, ½ tsp allspice)
- For the cream cheese swirl
8 oz cream cheese, softened
¼ cup granulated sugar
1 egg yolk
½ tsp vanilla extract
Directions
- Whisk together flour, pumpkin spice, baking soda, and salt in a medium bowl Set aside
- In a large bowl whisk pumpkin puree granulated sugar brown sugar eggs vegetable oil and vanilla extract until smooth
- Gradually add the flour mixture to the pumpkin mixture Stir gently just until combined do not overmix The batter should be thick but scoopable Fill each muffin liner about three quarters full
- In a separate bowl beat cream cheese until smooth Add sugar egg yolk and vanilla extract Beat again until creamy
- Spoon about one tablespoon of the cream cheese mixture on top of each muffin Use a toothpick to gently swirl it into the batter for a marbled effect or leave as a creamy center
- Preheat oven to 350 F Bake muffins for 18 to 20 minutes or until a toothpick inserted into the pumpkin part comes out with just a few moist crumbs The tops should spring back lightly when touched
- Let muffins cool in the pan for 5 minutes then transfer to a wire rack to cool completely